Source: r-bioc-structuralvariantannotation
Section: gnu-r
Priority: optional
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-structuralvariantannotation
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-structuralvariantannotation.git
Homepage: https://bioconductor.org/packages/StructuralVariantAnnotation/
Standards-Version: 4.6.2
Rules-Requires-Root: no
Build-Depends: debhelper-compat (= 13),
               dh-r,
               r-base-dev,
               r-bioc-genomicranges (>= 1.56.1),
               r-bioc-rtracklayer (>= 1.64.0),
               r-bioc-variantannotation (>= 1.50.0),
               r-bioc-biocgenerics (>= 0.50.0),
               r-cran-assertthat,
               r-bioc-biostrings (>= 2.72.1),
               r-bioc-pwalign (>= 1.0.0-2~0exp1),
               r-cran-stringr,
               r-cran-dplyr,
               r-cran-rlang,
               r-bioc-genomicfeatures (>= 1.56.0),
               r-bioc-iranges (>= 2.38.1),
               r-bioc-s4vectors (>= 0.42.1),
               r-bioc-summarizedexperiment (>= 1.34.0),
               r-bioc-genomeinfodb (>= 1.40.1)
Testsuite: autopkgtest-pkg-r

Package: r-bioc-structuralvariantannotation
Architecture: all
Depends: ${R:Depends},
         ${misc:Depends},
         r-bioc-genomicranges (>= 1.56.1),
         r-bioc-rtracklayer (>= 1.64.0),
         r-bioc-variantannotation (>= 1.50.0),
         r-bioc-biocgenerics (>= 0.50.0),
         r-bioc-biostrings (>= 2.72.1),
         r-bioc-pwalign (>= 1.0.0-2~0exp1),
         r-bioc-genomicfeatures (>= 1.56.0),
         r-bioc-iranges (>= 2.38.1),
         r-bioc-s4vectors (>= 0.42.1),
         r-bioc-summarizedexperiment (>= 1.34.0),
         r-bioc-genomeinfodb (>= 1.40.1)
Recommends: ${R:Recommends}
Suggests: ${R:Suggests},
          r-bioc-ggbio (>= 1.52.0),
          r-bioc-biovizbase (>= 1.52.0)
Description: Variant annotations for structural variants
 StructuralVariantAnnotation contains useful helper
 functions for dealing with structural variants in VCF format.
 The packages contains functions for parsing VCFs from a number
 of popular callers as well as functions for dealing with
 breakpoints involving two separate genomic loci encoded as
 GRanges objects.
